../../tmp/servers/virsirnadb/1676980831
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1209 | 1 | aggtccgtgagccgcttga | 19 | |
| AJ238799.1 | Hepatitis C virus type 1b complete genome, isolate Con1 | 9547 | ................... | 9565 | 100 |
| DQ071885.1 | Hepatitis C virus subtype 1b polyprotein mRNA, complete cds | 9547 | ................... | 9565 | 100 |
| EU857431.1 | Hepatitis C virus subtype 1b isolate Whu, complete genome | 9545 | ................... | 9563 | 100 |
| D85516.1 | Hepatitis C virus genomic RNA, complete cds | 9477 | ...............a... | 9495 | 94 |
| AF011751.1 | Hepatitis C virus strain H77 pCV-H77C polyprotein gene, complete cds | 9541 | ...............a... | 9559 | 94 |
| AF011752.1 | Hepatitis C virus strain H77 pCV-H11 polyprotein gene, complete cds | 9541 | ...............a... | 9559 | 94 |
| AF011753.1 | Hepatitis C virus strain H77 pH21 polyprotein gene, complete cds | 9541 | ...............a... | 9559 | 94 |
| D89815.1 | Hepatitis C virus genomic RNA, complete sequence | 9490 | ...............a... | 9508 | 94 |
| AF054247.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L6S, complete | 9537 | ...............a... | 9555 | 94 |
| AF054248.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L2S, complete | 9537 | ...............a... | 9555 | 94 |
| AF054249.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L4S, complete | 9538 | ...............a... | 9556 | 94 |
| AF176573.1 | Hepatitis C virus subtype 1b strain 274933RU, complete genome | 9542 | ...............a... | 9560 | 94 |
| AB016785.1 | Hepatitis C virus genomic RNA, complete sequence | 9480 | ...............a... | 9498 | 94 |
| AF169002.1 | Hepatitis C virus subtype 2a isolate NDM228, complete genome | 9602 | ...............a... | 9620 | 94 |
| AF169003.1 | Hepatitis C virus subtype 2a isolate G2aK1, complete genome | 9635 | ...............a... | 9653 | 94 |
| AF169004.1 | Hepatitis C virus subtype 2a isolate G2aK3, complete genome | 9595 | ...............a... | 9613 | 94 |
| AF169005.1 | Hepatitis C virus subtype 2a isolate NDM59, complete genome | 9642 | ...............a... | 9660 | 94 |
| AF271632.1 | Hepatitis C virus subtype 1a clone pHCV-1/SF9 A, complete genome | 9560 | ...............a... | 9578 | 94 |
| AB030907.1 | Hepatitis C virus (isolate JPUT971017) genomic RNA, complete genome | 9596 | ...............a... | 9614 | 94 |
| AJ278830.1 | Hepatitis C virus genomic RNA for polyprotein gene | 9552 | ...............a... | 9570 | 94 |
| AB049088.1 | Hepatitis C virus genomic RNA, complete genome, isolate: HCVT094 | 9558 | ...............a... | 9576 | 94 |
| AB049089.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT10 | 9513 | ...............a... | 9531 | 94 |
| AB049090.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT14 | 9513 | ...............a... | 9531 | 94 |
| AB049091.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT14 | 9489 | ...............a... | 9507 | 94 |
| AB049095.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT16 | 9527 | ...............a... | 9545 | 94 |
| AB049101.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT22 | 9540 | ...............a... | 9558 | 94 |
| AF333324.1 | Hepatitis C virus type 1b polyprotein mRNA, complete cds | 9529 | ...............a... | 9547 | 94 |
| AB047639.1 | Hepatitis C virus (isolate JFH-1) genomic RNA, complete genome | 9620 | ...............a... | 9638 | 94 |
| AB047640.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-1 | 9616 | ...............a... | 9634 | 94 |
| AB047641.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-2 | 9601 | ...............a... | 9619 | 94 |
| AB047642.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-3 | 9620 | ...............a... | 9638 | 94 |
| AB047643.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-4 | 9583 | ...............a... | 9601 | 94 |
| AB047644.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-5 | 9633 | ...............a... | 9651 | 94 |
| AB047645.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-6 | 9625 | ...............a... | 9643 | 94 |
| AF356827.1 | Hepatitis C virus subtype 1b isolate HCV-S1, complete genome | 9551 | ...............a... | 9569 | 94 |
| AY045702.1 | Hepatitis C virus isolate HCR6, complete genome | 9553 | ...............a... | 9571 | 94 |
| AF139594.2 | Hepatitis C virus subtype 1b strain HCV-N, complete genome | 9558 | ...............a... | 9576 | 94 |
| AB080299.1 | Hepatitis C virus genomic RNA, complete genome, isolate:M1LE | 9529 | ...............a... | 9547 | 94 |
| AY460204.1 | Hepatitis C virus from Shanghai, complete genome | 9519 | ...............a... | 9537 | 94 |
| AY746460.1 | Hepatitis C virus genotype 2a polyprotein gene, complete cds | 9631 | ...............a... | 9649 | 94 |
| D84263.2 | Hepatitis C virus (isolate VN235) genomic RNA, complete genome | 9557 | ...............a... | 9575 | 94 |
| D84264.2 | Hepatitis C virus (isolate VN405) genomic RNA, complete genome | 9543 | ...............a... | 9561 | 94 |
| D84265.2 | Hepatitis C virus (isolate VN004) genomic RNA, complete genome | 9564 | ...............a... | 9582 | 94 |
| AB191333.1 | Hepatitis C virus genomic RNA, complete genome, strain:0 | 9529 | ...............a... | 9547 | 94 |
| AB249644.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima | 9501 | ...............a... | 9519 | 94 |
| EF621489.1 | Hepatitis C virus subtype 1a strain HC-TN, complete genome | 9541 | ...............a... | 9559 | 94 |
| EU363761.1 | Recombinant Hepatitis C virus H77C/JFH1, complete genome | 9608 | ...............a... | 9626 | 94 |
| AB426117.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima | 9501 | ...............a... | 9519 | 94 |
| AB435162.2 | Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima | 9563 | ...............a... | 9581 | 94 |
| AB442219.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B- | 9529 | ...............a... | 9547 | 94 |
| AB442220.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH | 9529 | ...............a... | 9547 | 94 |
| AB442221.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH | 9529 | ...............a... | 9547 | 94 |
| AB442222.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B- | 9532 | ...............a... | 9550 | 94 |
| FN435993.1 | Hepatitis C virus subtype 1b complete genome, isolate EU1, genomic RN | 9555 | ...............a... | 9573 | 94 |
| AB520610.1 | Hepatitis C virus subtype 1a genomic RNA, complete genome, strain: HC | 9540 | ...............a... | 9558 | 94 |
| GU133617.1 | Hepatitis C virus subtype 1b, complete genome | 9588 | ...............a... | 9606 | 94 |
| D84262.2 | Hepatitis C virus (isolate Th580) genomic RNA, complete genome GCCAGC | 9570 | ...............a... | 9588 | 94 |
| AF177036.1 | Hepatitis C virus subtype 2a strain HC-J6CH clone pJ6CF, complete gen | 9653 | ...............a... | 9671 | 94 |
| AF009606.1 | Hepatitis C virus subtype 1a polyprotein gene, complete cds | 9588 | ...............a... | 9606 | 94 |
| AJ132997.1 | Hepatitis C virus, complete genome, isolate HCV-AD78P1 | 9475 | .....g.........a... | 9493 | 89 |
| FN666428.2 | Hepatitis C virus gene for polyprotein, genomic RNA, subtype 2q, isol | 9535 | .............a.a... | 9553 | 89 |
| DQ988073.1 | Hepatitis C virus isolate Eg2 polyprotein gene, partial cds | 1011 | ___..g...c......... | 1026 | 73 |
| EU155307.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V353/2002, complet | 8909 | _______............ | 8920 | 63 |
| EU155364.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V288/2006, complet | 8908 | _______............ | 8919 | 63 |